Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs5754958 chr22:22103599 T/C 6.77E-11 486 31.87 26.3 27.5 KM Plot
PRAD rs5754968 chr22:22105582 C/G 3.45E-6 494 34.32 26.27 31.27 KM Plot
PRAD rs5755875 chr22:22233205 G/A 3.71E-6 489 31.27 28 34.32 KM Plot
PRAD rs5755978 chr22:22254261 C/A 3.8E-6 493 31.27 26.27 34.32 KM Plot
PRAD rs5755996 chr22:22257652 A/T 3.46E-6 494 31.37 25.43 34.32 KM Plot
PRAD rs57650499 chr17:79635649 G/A 4.34E-5 489 30.78 31.32 25.67 KM Plot
PRAD rs57707013 chr17:79635281 C/T 1.16E-5 486 30.8 31.27 28 KM Plot
PRAD rs57796760 chr8:54184866 C/T 3.0E-6 492 31.27 26.93 49.93 KM Plot
PRAD rs5780056 chr1:201144198 GT/G 2.48E-5 494 30.27 31.22 42.43 KM Plot
PRAD rs58121794 chr8:54168363 C/T 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs58176956 chr4:187809577 G/C 1.78E-6 488 31.23 27.88 26.8 KM Plot
PRAD rs5817898 chr16:74287323 G/GA 3.26E-5 484 31.13 30.87 24.27 KM Plot
PRAD rs58219953 chr9:72849126 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs58249351 chr11:72463462 G/A 0.000164 483 30.53 35.5 23.25 KM Plot
PRAD rs58281597 chr2:239195117 A/G 8.93E-6 487 31 30.35 11.57 KM Plot